Synctex with Sweave/pgfSweave in TeXShop/TeXWorks

Ever been editing an .Rnw (Sweave) file and tried to sync a pdf with the source in TeXShop (or TeXWorks) and had it open the .tex file? This is because the synctex information (in the .synctex.gz file) is messed up. Both TeXShop and TeXWorks support synctex, that means that if everything is groovy, we should be able to jump between the corresponding places in the source and pdf windows.

Unfortunately all that goes out the window when using Sweave. Fortunately we can make it work! By that I mean it is possible to sync beween a pdf and the .Rnw source file. We need three things:

  1. Add the concordance option when compiling with Sweave. That means add the line \SweaveOpts{concordance=T} to the top of your document after loading the Sweave style file.

  2. Enable synctex with the --synctex=1 flag when compiling the tex file.

  3. From the patchDVI (sweavesearch project on R-Forge), you need to use the patchSynctex function. This package is not available on CRAN afaik so you should install it from source from R-Forge:

    install.packages("patchDVI", repos="")

Here is an example file for either Sweave or pgfSweave:




\title{Concordance Example}
\author{Cameron Bracken}

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eget dolor enim. Donec tincidunt augue porta justo lacinia
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eros sit amet lacus hendrerit rutrum. Proin a tellus sed magna
feugiat mollis. Fusce est augue, sodales quis scelerisque quis,
fringilla at leo.

x <- rnorm(10)



\caption{Example figure.}

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massa aliquam posuere. In nec convallis sapien. Aenean tincidunt,
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himenaeos. Nunc vulputate ipsum placerat enim hendrerit at aliquam
mi porttitor. Fusce eget commodo metus. Vivamus sed nisl eu enim
adipiscing feugiat at et dolor. Vestibulum ante ipsum primis in
faucibus orci luctus et ultrices posuere cubilia Curae;


Here is a script to compile:


R CMD Sweave "$1"
latexmk -pdf -silent -pdflatex=‘pdflatex –shell-escape –synctex=1′ "${1%.*}"
Rscript -e "library(‘patchDVI’);patchSynctex(‘${1%.*}.synctex.gz’)"

say you name it, then call it

$ myfile.Rnw

A much easier way would be to set up an engine in TeXShop or a custom “processing tool” in TeXWorks. There is a function in the patchDVI package called SweavePDF that should do the same thing but I have not tried it.

After all the compiling and patching of the synctex file is done, try right clicking and selecting ‘Sync’ in TeXShop or ‘Jump to PDF’ in TeXWorks, and everything should work! NOTE: I dont use TeXWorks so I haven’t gotten it to work but others have reported it does.

As for pgfSweave, the current version does not correctly output concordance information. But a patch enables proper concordance support (thanks aecay!). The next version of pgfSweave should have this working. To compile with pgfSweave, it is pretty much the same:


R CMD pgfsweave –graphics-only "$1"
make -j 2 -f "${1%.*}".makefile
latexmk -pdf -silent -pdflatex=’pdflatex –shell-escape –synctex=1 –file-line-error’ "${1%.*}"
Rscript -e "library(‘patchDVI’);patchSynctex(‘${1%.*}.synctex.gz’)"

2 thoughts on “Synctex with Sweave/pgfSweave in TeXShop/TeXWorks

  1. Hi, I know that this might come a bit late, but do you have any suggestions for synchronization among included files? I am including files with \SweaveInput, so that I can write each chapter of the book in a separate file, and I am having a hard time understanding how to sync back to the appropriate Rnw file from the pdf

    1. With TeXWorks, it just works. You should make sure that each of your .Rnw files has a concordance set, and make sure they have different names (using prefix-string in the \SweaveOpts). Then patchDVI will patch all of them.

      I think TeXShop might not support multiple source files with Synctex. At least it’s not working for me. I’m in TeXShop 2.47; I don’t know if that’s current or not.

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